OGtree: A Tool for Creating Genome Trees of Prokaryotes Based on Overlapping Genes (Help)

Input or paste a set of accession numbers of species genomes in FASTA-like format: Enter your email address: Email title (optional): Type of chromosomes: Circular Linear Method of phylogenetic reconstruction: UPGMA (Unweighted Pair-Group Method using Arithmetic mean) NJ (Neighbor-joining) FM (Fitch-Margoliash) Weight of overlapping-gene order:  and weight of overlapping-gene content: Method of identifying orthologous genes:  Bidirectional Best Hit (BBH)   Inparanoid       Threshold of E-value: 1e -       Threshold of alignment coverage in each sequence: %       Threshold of similarity: % Parameters of extracting genes from downloaded genomes:     Deletion of all hypothetical, putative and unknown CDSs     Deletion of possible horizontally transferred genes annotated at HGT-DB database

OGtree 1.0 by Li-Wei Jiang, Kuang-Lun Lin and Chin Lung Lu Institute of Bioinformatics & Department of Biological Science and Technology, National Chiao Tung University, Taiwan